Wednesday, 31st January 29th Annual Lorne Proteomics Symposium 2024

Dr Jennifer Van Eyk
Cedars-Sinai Medical Center, USA

• Can precision medicine be achieved? - Jennifer Van Eyk

• Multi-omic profiling of acute myeloid leukaemia to identify therapeutic targets - Heather C Murray

• An optimized DIA-MS workflow for HCP characterization and quantification in bioreactors to assess relationship in between processing conditions and critical quality attributes. - Janik Seidel
• The phospho-regulation of the histone lysine demethylase Rph1p in yeast - Nicola Karakatsanis
• Deciphering subcellular proteomic landscape of mouse heart using label-free data-independent acquisition mass spectrometry and machine learning - Haoyun Fang
• Identification of novel post-translationally modified immunopeptides using hybrid EAD-CID fragmentation - Mohammadreza Dorvash

Bioinformatics | Disease Proteomics | Interactomics and Spatial Proteomics

• No One is Left Behind: Bridging the Proteomics Divide with MD 2.0's Dataset Service - Anna Quaglieri
• Analysis platforms for Australian proteomics - Johan Gustafsson
• The Proteomic Analyst Suites: A collection of easy-to-use interactive web applications to analyse and visualise proteomic datasets - Ralf B Schittenhelm
• MHCpLogics: an interactive machine learning-based tool for unsupervised data visualisation and cluster analysis of immunopeptidomes - Mohammad Shahbazy
• Decoding the Interactome of Archaeal Cytoskeletal Proteins: Insights from Affinity-Tagged Protein Pull-Downs - Vinaya Shinde
• Streamlining proteomics education with Morpheus database searching on Galaxy Australia: An efficient and accessible approach for teaching contemporary proteomics techniques - Rohan GT Lowe
• A population-based approach to neoantigen prediction. - Wei Jie Ryan Lim
• TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage   - Susan Klaeger
•   Mitochondrial proteomics of different grades of glioma tissue reveal alteration in the energetic pathways - Rashmi Rana
• Low gas flow rates reduce early preterm lung injury in preterm lambs - Monique Fatmous
• High-Depth Multiplexed Drug Profiling with the Orbitrap Ascend Tribrid MS - Amanda E Lee
• High-resolution mass spectrometry peptide quantitation for biomarker verification using data-independent acquisition - Jeremy Potriquet
• Validation of Biomarkers for Endometriosis - Martin Mead
• Proteomics uncovers further role of plant virus coat protein - Nemat N. Sokhandan-bashir
• Integrated proteomics and single cell RNAseq reveal that steroid resistance in severe asthma is driven by immune cell senescence - Matthew B O'Rourke
• Opsonization Improves Proteomics Profiling of Burkholderia cenocepacia Infection within THP-1 Macrophage Cells - Michael Bacus
• Investigating the phospho-proteome of Red Blood Cells in Parkinson's Disease.  - Anne Roberts
• Cyclic ion mobility-enabled mass spectrometer and application to high throughput plasma proteomics - Caryn Hepburn
• Exploring Protein Structures from an Alternative Perspective: Hydrogen/Deuterium Exchange Mass Spectrometry (HDX-MS) at Monash Proteomics & Metabolomics Platform - Han Lee
• Exploring the impact of genetic polymorphism of superoxide dismutase on protein function and probable associations with Parkinson’s disease development - Nedeljka Rosic
• From microscopy to mass spectrometry: Investigating the hepatic adaptations to type 2 diabetes - Jackie Zhou
• Data-independent acquisition (DIA) using as high-field asymmetric waveform ion mobility spectrometer (FAIMS) of formalin-fixed paraffin embedded (FFPE) lung tissue to elucidate the proteomic changes in mucopolysaccharidosis (MPS) disease murine models - Yuen Tung Ngai
• The human cardiac O-GlcNAc modified proteome undergoes regional alterations in diabetes - Bethany Claridge
• Optimisation of laser capture microdissection with tandem mass spectrometry for the diagnosis of amyloid subtype - Dorothy Loo Oey
• Exploratory proteomic investigation to improve diagnostic management of transient ischaemic attacks (TIAs).  - Deeksha Sharma
• Clinical validation of a lectin bead-based diagnostic test for oesophageal cancer - Iris Wang
• Antibiotic resistance response of Acinetobacter baumannii through proteomics - Aiden AB Brennan
• Benchmarking magnetic Streptavidin beads for high-throughput enrichment of biotinylated proteins - Vineet Vaibhav
• Dysregulated proteins identified in both skin and blood in patients with psoriasis: a systematic review of proteomic studies - Bjørn Kromann Hansen
• Interactomics Identifies Novel Stealth SARS-CoV-2 Intercellular Infection Executed by NSP5/3CLpro Main Protease Rearrangement of the Cytoskeleton - Chris Overall
• Probing Antibody-Host Proteome Interactions via Intracellular Cross-linking - Rosa Viner
• Investigating the pathogenesis of steroid resistance in asthma, using proteomics and mass spectrometry techniques -
• Quantitative cross-linking mass spectrometry (qXL-MS) to define the Campylobacter jejuni interactome and the response to temperature stress. - Ashleigh L Dale
• Defining the 3D Structures of the Human Platelet Proteome using Alphafold2 and Chemical Crosslinking - Benjamin Eberand